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Electron backscatter diffraction measures a crystal orientation at every point of a surface. Serial sectioning repeats that measurement slice by slice, and this plugin turns the resulting stack into a three-dimensional g
Before anything is measured, this plugin answers a more basic question: is this acquisition good enough to measure? It checks focus, saturation, noise and spectrum, reports the dominant structure scale, and examines how
3D Object Analysis (MCIB3D) is a Dragonfly Prototype Apps plugin. It lets you pick a Dragonfly Channel or binary MultiROI, export it as a Fiji-readable TIFF, then run the 3D ImageJ Suite (MCIB3D) inside your locally-inst
Analyzes how every label of a labelled MultiROI touches the other labels: the contact area of each label pair, each label's total contact area and coordination number (how many partners it touches), surface area and cont
Anomaly / Defect Detection (Anomalib) is a Dragonfly plugin for unsupervised anomaly / defect detection. The key idea: you only need a batch of defect-free ("normal") images to train a model — no defect annotations requi
Auto Backup & Exit gives you a single 'back up and quit Dragonfly' button: capture the current session's scene in one click, then quit Dragonfly — and optionally shut the computer down afterwards.
BigStitcher Lite is a lightweight tile-stitching tool that runs inside Dragonfly. It takes multiple Dragonfly Channel tiles already loaded in your session, aligns them by translation, fuses them into one new stitched Cha
Separates touching hard-tissue elements that a single threshold merges into one blob — the individual bones of a skull, for instance. Following BounTI: seed at a high threshold where only the dense cores survive and the
Finds the cell in a volume-EM (SBF-SEM and similar) stack, crops to its 3-D bounding box, and reports enough QC to judge whether that crop is trustworthy.
Starting from one published Multi-ROI, extracts a centerline for every non-zero label, measures its real length, and appends that length to the same Multi-ROI as a new per-label scalar slot. The five tabs are the workflo
The CGAL Mesh_3 (Panel) plugin turns your Dragonfly segmentation — a multi-material Multi-ROI, a binary ROI, or an integer label Channel — directly into a simulation-ready tetrahedral (volume) mesh. The mesh is written a
This plugin automatically classifies every label in a MultiROI (each label is usually one particle / object in the image): using a paired intensity Channel, it extracts many per-label image features (radiomics), assigns
Cluster Measurements (UMAP/HDBSCAN) is a Dragonfly plugin that performs unsupervised clustering of a MultiROI's per-label measurement table. Once you have computed per-label measurements (volume, surface area, sphericity
Dragonfly renders one channel at a time through a lookup table and cannot display an RGB composite. A colour image imported into Dragonfly therefore arrives as three grayscale channels — Red - ..., Green - ..., Blue - ..
ComfyUI Image Generation (menu title ComfyUI Image Generation...) is a native, dockable Dragonfly panel plugin: it generates images with a local or remote ComfyUI server directly inside Dragonfly, supporting both text-to
Compute Overall Measurements (Mesh) is a Dragonfly Prototype Apps plugin that reports a full set of whole-mesh (global) scalar measurements for any surface mesh already present in your scene. Simply pick a mesh from the
Compute Vertex Measurements (Mesh) is a Dragonfly plugin that computes up to 20 per-vertex measurements on a surface mesh that already exists in your scene. Each measurement produces one scalar value for every vertex of
4D Drift Correction removes drift that accumulated while a time-lapse 3D image was acquired - stage creep, thermal expansion, specimen settling. Each time point is reduced to intensity projections, its shift relative to
Create a Report from Mesh lets you pick a published Mesh and turn all of its measurements into a ready-to-share report (Excel .xlsx or PowerPoint .pptx).
Create Rotational Views rotates a published image Channel around a chosen axis and stacks the per-angle 2D views into a brand-new image stack — one slice per angle. For a 3D volume it rotates about the axis and then proj
Create Synthetic CAD Models (STEP) builds real CAD solids from a menu of preset parametric shapes/designs and writes them as STEP files. On Dragonfly 2027.1+, it can also load a STEP into the current scene as a Mesh with
Create Synthetic Images is a Dragonfly Prototype Apps plugin that generates many kinds of synthetic 2D / 3D image data and imports them straight into the current Dragonfly session as Channels. It ships 26 generators orga
CT Artifact Correction (Algotom) is a Dragonfly plugin for pre/post-reconstruction artifact correction of an image Channel. You pick an image Channel from the scene (a projection/sinogram stack, or already-reconstructed
The CT/TEM Reconstruction (ASTRA) plugin reconstructs a 3D volume from a projection image stack directly inside Dragonfly. You select the projection Channel (with optional flat/dark correction images), enter the source-d
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